WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01E11.5a.1 Sequence Name  F01E11.5a.1
Length (nt)  1851   Chromosome Location  X: 6996853-7005575
Chromosome . Primary Identifier  X Chromosome Location . Start  6996853
Chromosome Location . End  7005575 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01E11.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017157 tyra-2 F01E11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01E11.5a F01E11.5a 1389   X: 6997087-6997167

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5a.1 6996853 7005575 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238383   315   X: 6996853-6997167 Caenorhabditis elegans
Exon238387   112   X: 6997220-6997331 Caenorhabditis elegans
Exon238391   132   X: 6997379-6997510 Caenorhabditis elegans
Exon238395   191   X: 6997565-6997755 Caenorhabditis elegans
Exon238399   101   X: 6997802-6997902 Caenorhabditis elegans
Exon238403   100   X: 6998846-6998945 Caenorhabditis elegans
Exon238411   195   X: 7000905-7001099 Caenorhabditis elegans
Exon238415   188   X: 7001146-7001333 Caenorhabditis elegans
Exon238420   121   X: 7001594-7001714 Caenorhabditis elegans
Exon238423   114   X: 7001763-7001876 Caenorhabditis elegans
Exon238426   49   X: 7003131-7003179 Caenorhabditis elegans
Exon238429   233   X: 7005343-7005575 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F01E11.5a.1 6996853 7005575 -1

1 Sequence

Length
1851

1 Sequence Ontology Term

Identifier Name Description
transcript