WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.5.1 Sequence Name  C54D1.5.1
Length (nt)  6043   Chromosome Location  X: 7143846-7151239
Chromosome . Primary Identifier  X Chromosome Location . Start  7143846
Chromosome Location . End  7151239 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016913 lam-2 C54D1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.5 C54D1.5 4902   X: 7144934-7145017

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54D1.5.1 7143846 7151239 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238683   1172   X: 7143846-7145017 Caenorhabditis elegans
Exon238684   182   X: 7145067-7145248 Caenorhabditis elegans
Exon238685   1326   X: 7145300-7146625 Caenorhabditis elegans
Exon238686   1511   X: 7146677-7148187 Caenorhabditis elegans
Exon238687   456   X: 7148238-7148693 Caenorhabditis elegans
Exon238688   122   X: 7148740-7148861 Caenorhabditis elegans
Exon238689   185   X: 7148908-7149092 Caenorhabditis elegans
Exon238690   179   X: 7149144-7149322 Caenorhabditis elegans
Exon238691   315   X: 7149375-7149689 Caenorhabditis elegans
Exon238692   118   X: 7149734-7149851 Caenorhabditis elegans
Exon238693   127   X: 7149899-7150025 Caenorhabditis elegans
Exon238694   350   X: 7150890-7151239 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54D1.5.1 7143846 7151239 -1

1 Sequence

Length
6043

1 Sequence Ontology Term

Identifier Name Description
transcript