WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D1.6.1 Sequence Name  C54D1.6.1
Length (nt)  2592   Chromosome Location  X: 7166005-7170625
Chromosome . Primary Identifier  X Chromosome Location . Start  7166005
Chromosome Location . End  7170625 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D1.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000238 bar-1 C54D1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D1.6 C54D1.6 2436   X: 7166152-7166387

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.6.1 7166005 7170625 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon238730   383   X: 7166005-7166387 Caenorhabditis elegans
Exon238731   157   X: 7167038-7167194 Caenorhabditis elegans
Exon238732   89   X: 7167241-7167329 Caenorhabditis elegans
Exon238733   232   X: 7167374-7167605 Caenorhabditis elegans
Exon238734   96   X: 7167649-7167744 Caenorhabditis elegans
Exon238735   126   X: 7167791-7167916 Caenorhabditis elegans
Exon238736   144   X: 7167965-7168108 Caenorhabditis elegans
Exon238737   114   X: 7168152-7168265 Caenorhabditis elegans
Exon238738   246   X: 7168311-7168556 Caenorhabditis elegans
Exon238739   213   X: 7168604-7168816 Caenorhabditis elegans
Exon238740   115   X: 7168871-7168985 Caenorhabditis elegans
Exon238741   125   X: 7169034-7169158 Caenorhabditis elegans
Exon238742   147   X: 7169205-7169351 Caenorhabditis elegans
Exon238743   105   X: 7169985-7170089 Caenorhabditis elegans
Exon238744   96   X: 7170147-7170242 Caenorhabditis elegans
Exon238745   127   X: 7170308-7170434 Caenorhabditis elegans
Exon238746   77   X: 7170549-7170625 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D1.6.1 7166005 7170625 -1

1 Sequence

Length
2592

1 Sequence Ontology Term

Identifier Name Description
transcript