WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K03A1.5.1 Sequence Name  K03A1.5.1
Length (nt)  2475   Chromosome Location  X: 7301389-7305570
Chromosome . Primary Identifier  X Chromosome Location . Start  7301389
Chromosome Location . End  7305570 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K03A1.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006351 sur-5 K03A1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K03A1.5 K03A1.5 2103   X: 7301760-7301885

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K03A1.5.1 7301389 7305570 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239252   497   X: 7301389-7301885 Caenorhabditis elegans
Exon239253   157   X: 7301932-7302088 Caenorhabditis elegans
Exon239254   310   X: 7302288-7302597 Caenorhabditis elegans
Exon239255   136   X: 7303145-7303280 Caenorhabditis elegans
Exon239256   101   X: 7303336-7303436 Caenorhabditis elegans
Exon239257   167   X: 7303498-7303664 Caenorhabditis elegans
Exon239258   185   X: 7304085-7304269 Caenorhabditis elegans
Exon239259   152   X: 7304313-7304464 Caenorhabditis elegans
Exon239260   324   X: 7304515-7304838 Caenorhabditis elegans
Exon239261   121   X: 7304886-7305006 Caenorhabditis elegans
Exon239262   104   X: 7305092-7305195 Caenorhabditis elegans
Exon239263   221   X: 7305350-7305570 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K03A1.5.1 7301389 7305570 -1

1 Sequence

Length
2475

1 Sequence Ontology Term

Identifier Name Description
transcript