WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F48E3.3.1 Sequence Name  F48E3.3.1
Length (nt)  4723   Chromosome Location  X: 7495694-7500982
Chromosome . Primary Identifier  X Chromosome Location . Start  7495694
Chromosome Location . End  7500982 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E3.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018604 uggt-1 F48E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48E3.3 F48E3.3 4482   X: 7495929-7496096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.3.1 7495694 7500982 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon239645   403   X: 7495694-7496096 Caenorhabditis elegans
Exon239646   745   X: 7496174-7496918 Caenorhabditis elegans
Exon239647   519   X: 7496971-7497489 Caenorhabditis elegans
Exon239648   914   X: 7497538-7498451 Caenorhabditis elegans
Exon239649   236   X: 7498498-7498733 Caenorhabditis elegans
Exon239650   637   X: 7498790-7499426 Caenorhabditis elegans
Exon239651   90   X: 7499470-7499559 Caenorhabditis elegans
Exon239652   564   X: 7499609-7500172 Caenorhabditis elegans
Exon239653   264   X: 7500222-7500485 Caenorhabditis elegans
Exon239654   131   X: 7500540-7500670 Caenorhabditis elegans
Exon239655   89   X: 7500718-7500806 Caenorhabditis elegans
Exon239656   131   X: 7500852-7500982 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F48E3.3.1 7495694 7500982 -1

1 Sequence

Length
4723

1 Sequence Ontology Term

Identifier Name Description
transcript