WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.3 Sequence Name  C54D2.5a.3
Length (nt)  6133   Chromosome Location  X: 7847682-7861308
Chromosome . Primary Identifier  X Chromosome Location . Start  7847682
Chromosome Location . End  7861308 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240731   597   X: 7847682-7848278 Caenorhabditis elegans
Exon240739   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240746   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240753   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240760   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240767   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240774   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240781   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240788   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240795   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240802   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240812   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240817   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240824   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240831   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240838   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240845   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240852   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240859   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240866   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240873   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240880   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240887   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240894   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240901   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240908   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240915   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240922   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240934   145   X: 7861164-7861308 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54D2.5a.3 7847682 7861308 -1

1 Sequence

Length
6133

1 Sequence Ontology Term

Identifier Name Description
transcript