WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54D2.5a.2 Sequence Name  C54D2.5a.2
Length (nt)  6218   Chromosome Location  X: 7847682-7875954
Chromosome . Primary Identifier  X Chromosome Location . Start  7847682
Chromosome Location . End  7875954 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54D2.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54D2.5a C54D2.5a 5514   X: 7848224-7848278

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.2 7847682 7875954 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

31 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon240732   597   X: 7847682-7848278 Caenorhabditis elegans
Exon240738   167   X: 7848334-7848500 Caenorhabditis elegans
Exon240745   179   X: 7849296-7849474 Caenorhabditis elegans
Exon240752   199   X: 7849590-7849788 Caenorhabditis elegans
Exon240759   201   X: 7850445-7850645 Caenorhabditis elegans
Exon240766   359   X: 7850689-7851047 Caenorhabditis elegans
Exon240773   105   X: 7851091-7851195 Caenorhabditis elegans
Exon240780   518   X: 7852006-7852523 Caenorhabditis elegans
Exon240787   242   X: 7852580-7852821 Caenorhabditis elegans
Exon240794   810   X: 7852865-7853674 Caenorhabditis elegans
Exon240801   180   X: 7853723-7853902 Caenorhabditis elegans
Exon240811   130   X: 7854299-7854428 Caenorhabditis elegans
Exon240816   186   X: 7854524-7854709 Caenorhabditis elegans
Exon240823   502   X: 7854757-7855258 Caenorhabditis elegans
Exon240830   127   X: 7855305-7855431 Caenorhabditis elegans
Exon240837   119   X: 7855479-7855597 Caenorhabditis elegans
Exon240844   127   X: 7855643-7855769 Caenorhabditis elegans
Exon240851   93   X: 7855816-7855908 Caenorhabditis elegans
Exon240858   75   X: 7855960-7856034 Caenorhabditis elegans
Exon240865   82   X: 7856086-7856167 Caenorhabditis elegans
Exon240872   108   X: 7856215-7856322 Caenorhabditis elegans
Exon240879   78   X: 7856396-7856473 Caenorhabditis elegans
Exon240886   234   X: 7856523-7856756 Caenorhabditis elegans
Exon240893   92   X: 7857325-7857416 Caenorhabditis elegans
Exon240900   235   X: 7857466-7857700 Caenorhabditis elegans
Exon240907   104   X: 7857749-7857852 Caenorhabditis elegans
Exon240914   57   X: 7858270-7858326 Caenorhabditis elegans
Exon240921   82   X: 7860000-7860081 Caenorhabditis elegans
Exon240930   144   X: 7861164-7861307 Caenorhabditis elegans
Exon240946   34   X: 7875811-7875844 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C54D2.5a.2 7847682 7875954 -1

1 Sequence

Length
6218

1 Sequence Ontology Term

Identifier Name Description
transcript