WormMine: Gene WBGene00023042

• WormBase Gene ID: WBGene00023042
• Gene Name: F41D9.t3
• Sequence Name: F41D9.t3
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by daf-12 based on tiling array studies.
• Biotype: SO:0001272
• Genetic Position: :±
• Length (nt): 73

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023042

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F41D9.t3	F41D9.t3	73	X: 8404499-8404571

Other

0 CDSs

2 RNAi Result

• WBRNAi00000282
• WBRNAi00032088

11 Allele

• gk964260
• gk962707
• gk964193
• gk964194
• gk963896
• gk963732
• gk964126
• gk964401
• gk964402
• gk457485
• ok1953

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023042
• Start: 8404499
• End: 8404571
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF4 [daf-12	Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01.	WBPaper00040221:DAF-12_target_ALF4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023042
• Start: 8404499
• End: 8404571
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 73

1 Sequence Ontology Term