WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G8AL.10a.1 Sequence Name  Y48G8AL.10a.1
Length (nt)  3892   Chromosome Location  I: 1136366-1154388
Chromosome . Primary Identifier  I Chromosome Location . Start  1136366
Chromosome Location . End  1154388 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G8AL.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021689 znf-236 Y48G8AL.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G8AL.10a Y48G8AL.10a 3738   I: 1136515-1136742

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.10a.1 1136366 1154388 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon2158   377   I: 1136366-1136742 Caenorhabditis elegans
Exon2164   330   I: 1137812-1138141 Caenorhabditis elegans
Exon2168   111   I: 1140158-1140268 Caenorhabditis elegans
Exon2172   229   I: 1140803-1141031 Caenorhabditis elegans
Exon2176   214   I: 1142085-1142298 Caenorhabditis elegans
Exon2180   191   I: 1143349-1143539 Caenorhabditis elegans
Exon2184   141   I: 1145715-1145855 Caenorhabditis elegans
Exon2189   499   I: 1147087-1147585 Caenorhabditis elegans
Exon2193   691   I: 1149906-1150596 Caenorhabditis elegans
Exon2196   158   I: 1152123-1152280 Caenorhabditis elegans
Exon2197   179   I: 1152634-1152812 Caenorhabditis elegans
Exon2198   131   I: 1152878-1153008 Caenorhabditis elegans
Exon2199   641   I: 1153748-1154388 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G8AL.10a.1 1136366 1154388 -1

1 Sequence

Length
3892

1 Sequence Ontology Term

Identifier Name Description
transcript