WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK899.8a.1 Sequence Name  ZK899.8a.1
Length (nt)  4189   Chromosome Location  X: 9472470-9516454
Chromosome . Primary Identifier  X Chromosome Location . Start  9472470
Chromosome Location . End  9516454 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK899.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001516 gap-2 ZK899.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK899.8a ZK899.8a 3624   X: 9472470-9472620

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8a.1 9472470 9516454 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon245523   151   X: 9472470-9472620 Caenorhabditis elegans
Exon245525   122   X: 9475263-9475384 Caenorhabditis elegans
Exon245528   70   X: 9476313-9476382 Caenorhabditis elegans
Exon245531   180   X: 9476965-9477144 Caenorhabditis elegans
Exon245543   221   X: 9496541-9496761 Caenorhabditis elegans
Exon245559   92   X: 9498111-9498202 Caenorhabditis elegans
Exon245574   173   X: 9502841-9503013 Caenorhabditis elegans
Exon245587   121   X: 9503911-9504031 Caenorhabditis elegans
Exon245603   201   X: 9510525-9510725 Caenorhabditis elegans
Exon245617   135   X: 9511028-9511162 Caenorhabditis elegans
Exon245633   226   X: 9513131-9513356 Caenorhabditis elegans
Exon245649   344   X: 9513420-9513763 Caenorhabditis elegans
Exon245665   339   X: 9513812-9514150 Caenorhabditis elegans
Exon245681   261   X: 9514304-9514564 Caenorhabditis elegans
Exon245697   375   X: 9514709-9515083 Caenorhabditis elegans
Exon245713   193   X: 9515137-9515329 Caenorhabditis elegans
Exon245729   170   X: 9515374-9515543 Caenorhabditis elegans
Exon245745   157   X: 9515589-9515745 Caenorhabditis elegans
Exon245776   658   X: 9515797-9516454 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZK899.8a.1 9472470 9516454 1

1 Sequence

Length
4189

1 Sequence Ontology Term

Identifier Name Description
transcript