WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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CDS :

WormMine ID  CDS:Y71F9B.10d Sequence Name  Y71F9B.10d
Length (nt)  3480   Chromosome Location  I: 2761318-2761513
Chromosome . Primary Identifier  I Chromosome Location . Start  2761318
Chromosome Location . End  2761513
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.10d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE50084 SOP-3, isoform d 128.6 1159 Caenorhabditis elegans
 

Other

19 RNAi

WormBase ID
WBRNAi00064589
WBRNAi00058174
WBRNAi00064759
WBRNAi00004803
WBRNAi00004806
WBRNAi00004807
WBRNAi00004812
WBRNAi00037777
WBRNAi00070902
WBRNAi00075710
WBRNAi00075711
WBRNAi00075714
WBRNAi00075715
WBRNAi00084380
WBRNAi00084402
WBRNAi00075713
WBRNAi00075712
WBRNAi00070903
WBRNAi00117642

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y71F9B.10d 2761318 2761513 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004946 sop-3 Y71F9B.10 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y71F9B.10d 2761318 2761513 -1
CDS:Y71F9B.10d 2762147 2762392 -1
CDS:Y71F9B.10d 2763442 2764398 -1
CDS:Y71F9B.10d 2765092 2765677 -1
CDS:Y71F9B.10d 2765738 2765896 -1
CDS:Y71F9B.10d 2767170 2767829 -1
CDS:Y71F9B.10d 2768648 2768871 -1
CDS:Y71F9B.10d 2769761 2769872 -1
CDS:Y71F9B.10d 2770801 2771140 -1

1 Sequence

Length
3480

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y71F9B.10d.1 Y71F9B.10d.1 3480   I: 2761318-2771140