WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47A4.1a.1 Sequence Name  F47A4.1a.1
Length (nt)  1898   Chromosome Location  X: 9801081-9807662
Chromosome . Primary Identifier  X Chromosome Location . Start  9801081
Chromosome Location . End  9807662 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47A4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009799 lgc-47 F47A4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47A4.1a F47A4.1a 1230   X: 9801474-9801544

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.1a.1 9801081 9807662 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247125   464   X: 9801081-9801544 Caenorhabditis elegans
Exon247127   110   X: 9802103-9802212 Caenorhabditis elegans
Exon247129   105   X: 9802262-9802366 Caenorhabditis elegans
Exon247131   100   X: 9802463-9802562 Caenorhabditis elegans
Exon247133   166   X: 9803901-9804066 Caenorhabditis elegans
Exon247135   105   X: 9804500-9804604 Caenorhabditis elegans
Exon247137   119   X: 9804714-9804832 Caenorhabditis elegans
Exon247139   130   X: 9805780-9805909 Caenorhabditis elegans
Exon247141   65   X: 9805960-9806024 Caenorhabditis elegans
Exon247143   158   X: 9806086-9806243 Caenorhabditis elegans
Exon247147   108   X: 9806922-9807029 Caenorhabditis elegans
Exon247149   268   X: 9807395-9807662 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47A4.1a.1 9801081 9807662 -1

1 Sequence

Length
1898

1 Sequence Ontology Term

Identifier Name Description
transcript