WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F21G4.6d.1 Sequence Name  F21G4.6d.1
Length (nt)  6137   Chromosome Location  X: 9908804-9917444
Chromosome . Primary Identifier  X Chromosome Location . Start  9908804
Chromosome Location . End  9917444 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F21G4.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009027 htt-1 F21G4.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F21G4.6d F21G4.6d 6027   X: 9908914-9909054

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F21G4.6d.1 9908804 9917444 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247369   251   X: 9908804-9909054 Caenorhabditis elegans
Exon247377   172   X: 9909106-9909277 Caenorhabditis elegans
Exon247383   154   X: 9909419-9909572 Caenorhabditis elegans
Exon247389   224   X: 9909618-9909841 Caenorhabditis elegans
Exon247395   295   X: 9909888-9910182 Caenorhabditis elegans
Exon247401   238   X: 9910287-9910524 Caenorhabditis elegans
Exon247407   114   X: 9910571-9910684 Caenorhabditis elegans
Exon247413   539   X: 9911039-9911577 Caenorhabditis elegans
Exon247419   382   X: 9911625-9912006 Caenorhabditis elegans
Exon247425   110   X: 9912054-9912163 Caenorhabditis elegans
Exon247430   130   X: 9912539-9912668 Caenorhabditis elegans
Exon247436   136   X: 9912717-9912852 Caenorhabditis elegans
Exon247441   270   X: 9912912-9913181 Caenorhabditis elegans
Exon247447   157   X: 9913249-9913405 Caenorhabditis elegans
Exon247453   124   X: 9913449-9913572 Caenorhabditis elegans
Exon247459   471   X: 9913615-9914085 Caenorhabditis elegans
Exon247465   135   X: 9914136-9914270 Caenorhabditis elegans
Exon247471   345   X: 9914433-9914777 Caenorhabditis elegans
Exon247477   218   X: 9914825-9915042 Caenorhabditis elegans
Exon247483   279   X: 9915091-9915369 Caenorhabditis elegans
Exon247489   120   X: 9915534-9915653 Caenorhabditis elegans
Exon247495   307   X: 9915704-9916010 Caenorhabditis elegans
Exon247501   171   X: 9916054-9916224 Caenorhabditis elegans
Exon247507   135   X: 9916272-9916406 Caenorhabditis elegans
Exon247512   114   X: 9916572-9916685 Caenorhabditis elegans
Exon247519   157   X: 9916732-9916888 Caenorhabditis elegans
Exon247525   137   X: 9916938-9917074 Caenorhabditis elegans
Exon247531   108   X: 9917122-9917229 Caenorhabditis elegans
Exon247536   144   X: 9917301-9917444 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F21G4.6d.1 9908804 9917444 -1

1 Sequence

Length
6137

1 Sequence Ontology Term

Identifier Name Description
transcript