WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C17G1.6a.1 Sequence Name  C17G1.6a.1
Length (nt)  2539   Chromosome Location  X: 9944844-9949060
Chromosome . Primary Identifier  X Chromosome Location . Start  9944844
Chromosome Location . End  9949060 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C17G1.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003553 nas-37 C17G1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C17G1.6a C17G1.6a 2298   X: 9945084-9945146

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C17G1.6a.1 9944844 9949060 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon247620   303   X: 9944844-9945146 Caenorhabditis elegans
Exon247622   88   X: 9945193-9945280 Caenorhabditis elegans
Exon247624   87   X: 9945564-9945650 Caenorhabditis elegans
Exon247626   55   X: 9945697-9945751 Caenorhabditis elegans
Exon247628   170   X: 9945814-9945983 Caenorhabditis elegans
Exon247630   146   X: 9946029-9946174 Caenorhabditis elegans
Exon247632   317   X: 9946298-9946614 Caenorhabditis elegans
Exon247634   126   X: 9946838-9946963 Caenorhabditis elegans
Exon247636   109   X: 9947008-9947116 Caenorhabditis elegans
Exon247638   95   X: 9947177-9947271 Caenorhabditis elegans
Exon247640   117   X: 9947320-9947436 Caenorhabditis elegans
Exon247642   171   X: 9947482-9947652 Caenorhabditis elegans
Exon247644   52   X: 9947820-9947871 Caenorhabditis elegans
Exon247646   108   X: 9948036-9948143 Caenorhabditis elegans
Exon247648   272   X: 9948236-9948507 Caenorhabditis elegans
Exon247650   157   X: 9948563-9948719 Caenorhabditis elegans
Exon247652   96   X: 9948847-9948942 Caenorhabditis elegans
Exon247654   70   X: 9948991-9949060 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C17G1.6a.1 9944844 9949060 -1

1 Sequence

Length
2539

1 Sequence Ontology Term

Identifier Name Description
transcript