WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46F6.1a.1 Sequence Name  F46F6.1a.1
Length (nt)  2405   Chromosome Location  X: 10373235-10377662
Chromosome . Primary Identifier  X Chromosome Location . Start  10373235
Chromosome Location . End  10377662 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004375 rme-4 F46F6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46F6.1a F46F6.1a 1986   X: 10373602-10374007

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.1a.1 10373235 10377662 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon248759   773   X: 10373235-10374007 Caenorhabditis elegans
Exon248760   167   X: 10374571-10374737 Caenorhabditis elegans
Exon248764   129   X: 10374786-10374914 Caenorhabditis elegans
Exon248768   54   X: 10374962-10375015 Caenorhabditis elegans
Exon248772   96   X: 10375270-10375365 Caenorhabditis elegans
Exon248776   336   X: 10375417-10375752 Caenorhabditis elegans
Exon248780   103   X: 10375798-10375900 Caenorhabditis elegans
Exon248784   230   X: 10376322-10376551 Caenorhabditis elegans
Exon248788   169   X: 10376595-10376763 Caenorhabditis elegans
Exon248792   117   X: 10377204-10377320 Caenorhabditis elegans
Exon248796   159   X: 10377384-10377542 Caenorhabditis elegans
Exon248800   72   X: 10377591-10377662 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46F6.1a.1 10373235 10377662 -1

1 Sequence

Length
2405

1 Sequence Ontology Term

Identifier Name Description
transcript