WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F46F6.1a Sequence Name  F46F6.1a
Length (nt)  1986   Chromosome Location  X: 10373602-10374007
Chromosome . Primary Identifier  X Chromosome Location . Start  10373602
Chromosome Location . End  10374007
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46F6.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE18697 RME-4, isoform a 73.7 661 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00047563
WBRNAi00032384

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F46F6.1a 10373602 10374007 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004375 rme-4 F46F6.1 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:F46F6.1a 10373602 10374007 -1
CDS:F46F6.1a 10374571 10374737 -1
CDS:F46F6.1a 10374786 10374914 -1
CDS:F46F6.1a 10374962 10375015 -1
CDS:F46F6.1a 10375270 10375365 -1
CDS:F46F6.1a 10375417 10375752 -1
CDS:F46F6.1a 10375798 10375900 -1
CDS:F46F6.1a 10376322 10376551 -1
CDS:F46F6.1a 10376595 10376763 -1
CDS:F46F6.1a 10377204 10377320 -1
CDS:F46F6.1a 10377384 10377542 -1
CDS:F46F6.1a 10377591 10377610 -1

1 Sequence

Length
1986

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F46F6.1a.2 F46F6.1a.2 2706   X: 10373232-10379845
Transcript:F46F6.1a.3 F46F6.1a.3 2499   X: 10373232-10379342
Transcript:F46F6.1a.1 F46F6.1a.1 2405   X: 10373235-10377662