WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D1.1m.1 Sequence Name  C09D1.1m.1
Length (nt)  22527   Chromosome Location  I: 4035893-4090427
Chromosome . Primary Identifier  I Chromosome Location . Start  4035893
Chromosome Location . End  4090427 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D1.1m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006820 unc-89 C09D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D1.1m C09D1.1m 22527   I: 4035893-4035942

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1m.1 4035893 4090427 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

48 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon8359   50   I: 4035893-4035942 Caenorhabditis elegans
Exon8368   274   I: 4036629-4036902 Caenorhabditis elegans
Exon8377   137   I: 4036947-4037083 Caenorhabditis elegans
Exon8386   171   I: 4038490-4038660 Caenorhabditis elegans
Exon8395   163   I: 4038710-4038872 Caenorhabditis elegans
Exon8406   182   I: 4044800-4044981 Caenorhabditis elegans
Exon8415   79   I: 4045025-4045103 Caenorhabditis elegans
Exon8424   221   I: 4045496-4045716 Caenorhabditis elegans
Exon8433   83   I: 4046020-4046102 Caenorhabditis elegans
Exon8447   138   I: 4047250-4047387 Caenorhabditis elegans
Exon8460   111   I: 4047965-4048075 Caenorhabditis elegans
Exon8474   227   I: 4048124-4048350 Caenorhabditis elegans
Exon8488   744   I: 4048906-4049649 Caenorhabditis elegans
Exon8502   69   I: 4049972-4050040 Caenorhabditis elegans
Exon8516   216   I: 4050093-4050308 Caenorhabditis elegans
Exon8530   188   I: 4051955-4052142 Caenorhabditis elegans
Exon8544   484   I: 4052456-4052939 Caenorhabditis elegans
Exon8558   186   I: 4053398-4053583 Caenorhabditis elegans
Exon8566   66   I: 4054476-4054541 Caenorhabditis elegans
Exon8577   1854   I: 4055391-4057244 Caenorhabditis elegans
Exon8592   357   I: 4058536-4058892 Caenorhabditis elegans
Exon8606   1232   I: 4058979-4060210 Caenorhabditis elegans
Exon8611   142   I: 4060266-4060407 Caenorhabditis elegans
Exon8634   157   I: 4062304-4062460 Caenorhabditis elegans
Exon8648   2160   I: 4062675-4064834 Caenorhabditis elegans
Exon8659   6065   I: 4064920-4070984 Caenorhabditis elegans
Exon8673   244   I: 4071035-4071278 Caenorhabditis elegans
Exon8687   330   I: 4071333-4071662 Caenorhabditis elegans
Exon8705   104   I: 4073538-4073641 Caenorhabditis elegans
Exon8719   275   I: 4075253-4075527 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D1.1m.1 4035893 4090427 1

1 Sequence

Length
22527

1 Sequence Ontology Term

Identifier Name Description
transcript