WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A10.1d.1 Sequence Name  T05A10.1d.1
Length (nt)  6729   Chromosome Location  X: 10773091-10782386
Chromosome . Primary Identifier  X Chromosome Location . Start  10773091
Chromosome Location . End  10782386 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A10.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004862 sma-9 T05A10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A10.1d T05A10.1d 6729   X: 10773091-10773654

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1d.1 10773091 10782386 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon250055   564   X: 10773091-10773654 Caenorhabditis elegans
Exon250070   156   X: 10773707-10773862 Caenorhabditis elegans
Exon250084   538   X: 10773931-10774468 Caenorhabditis elegans
Exon250097   452   X: 10774893-10775344 Caenorhabditis elegans
Exon250110   76   X: 10775530-10775605 Caenorhabditis elegans
Exon250123   410   X: 10775830-10776239 Caenorhabditis elegans
Exon250137   138   X: 10776288-10776425 Caenorhabditis elegans
Exon250152   219   X: 10776573-10776791 Caenorhabditis elegans
Exon250166   1523   X: 10776840-10778362 Caenorhabditis elegans
Exon250181   105   X: 10778436-10778540 Caenorhabditis elegans
Exon250196   121   X: 10778743-10778863 Caenorhabditis elegans
Exon250211   98   X: 10778910-10779007 Caenorhabditis elegans
Exon250226   116   X: 10779061-10779176 Caenorhabditis elegans
Exon250241   109   X: 10779262-10779370 Caenorhabditis elegans
Exon250256   221   X: 10779422-10779642 Caenorhabditis elegans
Exon250271   158   X: 10779689-10779846 Caenorhabditis elegans
Exon250286   276   X: 10779896-10780171 Caenorhabditis elegans
Exon250301   149   X: 10780228-10780376 Caenorhabditis elegans
Exon250316   143   X: 10780465-10780607 Caenorhabditis elegans
Exon250341   464   X: 10780896-10781359 Caenorhabditis elegans
Exon250354   101   X: 10781498-10781598 Caenorhabditis elegans
Exon250366   244   X: 10781646-10781889 Caenorhabditis elegans
Exon250378   142   X: 10781940-10782081 Caenorhabditis elegans
Exon250391   137   X: 10782133-10782269 Caenorhabditis elegans
Exon250402   69   X: 10782318-10782386 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A10.1d.1 10773091 10782386 1

1 Sequence

Length
6729

1 Sequence Ontology Term

Identifier Name Description
transcript