WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05A9.1a.1 Sequence Name  C05A9.1a.1
Length (nt)  3991   Chromosome Location  X: 10854216-10859297
Chromosome . Primary Identifier  X Chromosome Location . Start  10854216
Chromosome Location . End  10859297 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05A9.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003999 pgp-5 C05A9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05A9.1a C05A9.1a 3759   X: 10854381-10854743

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C05A9.1a.1 10854216 10859297 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251066   528   X: 10854216-10854743 Caenorhabditis elegans
Exon251068   204   X: 10854800-10855003 Caenorhabditis elegans
Exon251070   465   X: 10855050-10855514 Caenorhabditis elegans
Exon251072   129   X: 10855560-10855688 Caenorhabditis elegans
Exon251074   105   X: 10855739-10855843 Caenorhabditis elegans
Exon251076   363   X: 10855890-10856252 Caenorhabditis elegans
Exon251078   269   X: 10856298-10856566 Caenorhabditis elegans
Exon251080   100   X: 10856613-10856712 Caenorhabditis elegans
Exon251082   90   X: 10856761-10856850 Caenorhabditis elegans
Exon251084   612   X: 10856898-10857509 Caenorhabditis elegans
Exon251086   114   X: 10857752-10857865 Caenorhabditis elegans
Exon251088   172   X: 10857912-10858083 Caenorhabditis elegans
Exon251090   297   X: 10858125-10858421 Caenorhabditis elegans
Exon251092   134   X: 10858467-10858600 Caenorhabditis elegans
Exon251095   110   X: 10858647-10858756 Caenorhabditis elegans
Exon251096   157   X: 10858852-10859008 Caenorhabditis elegans
Exon251097   67   X: 10859054-10859120 Caenorhabditis elegans
Exon251098   75   X: 10859223-10859297 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C05A9.1a.1 10854216 10859297 -1

1 Sequence

Length
3991

1 Sequence Ontology Term

Identifier Name Description
transcript