WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T21E8.1b.1 Sequence Name  T21E8.1b.1
Length (nt)  3615   Chromosome Location  X: 10871346-10876025
Chromosome . Primary Identifier  X Chromosome Location . Start  10871346
Chromosome Location . End  10876025 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T21E8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004000 pgp-6 T21E8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T21E8.1b T21E8.1b 3615   X: 10871346-10871708

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1b.1 10871346 10876025 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon251167   363   X: 10871346-10871708 Caenorhabditis elegans
Exon251170   204   X: 10871754-10871957 Caenorhabditis elegans
Exon251173   465   X: 10872008-10872472 Caenorhabditis elegans
Exon251176   129   X: 10872523-10872651 Caenorhabditis elegans
Exon251179   105   X: 10872696-10872800 Caenorhabditis elegans
Exon251182   363   X: 10872865-10873227 Caenorhabditis elegans
Exon251185   284   X: 10873274-10873557 Caenorhabditis elegans
Exon251188   97   X: 10873608-10873704 Caenorhabditis elegans
Exon251191   90   X: 10873945-10874034 Caenorhabditis elegans
Exon251194   615   X: 10874079-10874693 Caenorhabditis elegans
Exon251197   114   X: 10874743-10874856 Caenorhabditis elegans
Exon251200   172   X: 10874900-10875071 Caenorhabditis elegans
Exon251203   297   X: 10875270-10875566 Caenorhabditis elegans
Exon251206   134   X: 10875614-10875747 Caenorhabditis elegans
Exon251209   110   X: 10875793-10875902 Caenorhabditis elegans
Exon251211   73   X: 10875953-10876025 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T21E8.1b.1 10871346 10876025 -1

1 Sequence

Length
3615

1 Sequence Ontology Term

Identifier Name Description
transcript