WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F29G6.3f.1 Sequence Name  F29G6.3f.1
Length (nt)  6528   Chromosome Location  X: 11511560-11519066
Chromosome . Primary Identifier  X Chromosome Location . Start  11511560
Chromosome Location . End  11519066 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F29G6.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009259 hpo-34 F29G6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F29G6.3f F29G6.3f 5406   X: 11512963-11517504

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3f.1 11511560 11519066 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon253432   286   X: 11511560-11511845 Caenorhabditis elegans
Exon253440   48   X: 11511892-11511939 Caenorhabditis elegans
Exon253447   108   X: 11511986-11512093 Caenorhabditis elegans
Exon253454   272   X: 11512138-11512409 Caenorhabditis elegans
Exon253460   58   X: 11512523-11512580 Caenorhabditis elegans
Exon253468   4843   X: 11512662-11517504 Caenorhabditis elegans
Exon253486   108   X: 11517551-11517658 Caenorhabditis elegans
Exon253493   102   X: 11517705-11517806 Caenorhabditis elegans
Exon253500   105   X: 11517854-11517958 Caenorhabditis elegans
Exon253507   118   X: 11518005-11518122 Caenorhabditis elegans
Exon253514   101   X: 11518180-11518280 Caenorhabditis elegans
Exon253522   66   X: 11518324-11518389 Caenorhabditis elegans
Exon253528   81   X: 11518441-11518521 Caenorhabditis elegans
Exon253534   54   X: 11518734-11518787 Caenorhabditis elegans
Exon253540   101   X: 11518845-11518945 Caenorhabditis elegans
Exon253547   77   X: 11518990-11519066 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F29G6.3f.1 11511560 11519066 -1

1 Sequence

Length
6528

1 Sequence Ontology Term

Identifier Name Description
transcript