WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:H05G16.1a Sequence Name  H05G16.1a
Length (nt)  3276   Chromosome Location  X: 11576256-11576381
Chromosome . Primary Identifier  X Chromosome Location . Start  11576256
Chromosome Location . End  11576381
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H05G16.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE43269 FRM-3, isoform a 122.4 1091 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00049303
WBRNAi00114828
WBRNAi00016198
WBRNAi00033665
WBRNAi00077329

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:H05G16.1a 11576256 11576381 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:H05G16.1a 11576256 11576381 1
CDS:H05G16.1a 11576442 11576546 1
CDS:H05G16.1a 11576609 11576733 1
CDS:H05G16.1a 11577645 11577741 1
CDS:H05G16.1a 11577792 11577916 1
CDS:H05G16.1a 11577960 11578203 1
CDS:H05G16.1a 11578254 11578414 1
CDS:H05G16.1a 11578460 11578534 1
CDS:H05G16.1a 11578620 11580837 1

1 Sequence

Length
3276

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H05G16.1a.1 H05G16.1a.1 4289   X: 11572511-11581760
Transcript:H05G16.1a.2 H05G16.1a.2 4208   X: 11576247-11581760