WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1h.2 Sequence Name  H20J18.1h.2
Length (nt)  3477   Chromosome Location  X: 12503887-12509225
Chromosome . Primary Identifier  X Chromosome Location . Start  12503887
Chromosome Location . End  12509225 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1h.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1h H20J18.1h 2736   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1h.2 12503887 12509225 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255706   847   X: 12503887-12504733 Caenorhabditis elegans
Exon255729   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255741   166   X: 12505146-12505311 Caenorhabditis elegans
Exon255762   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255775   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255786   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255798   134   X: 12506881-12507014 Caenorhabditis elegans
Exon255810   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255822   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255834   68   X: 12509158-12509225 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1h.2 12503887 12509225 -1

1 Sequence

Length
3477

1 Sequence Ontology Term

Identifier Name Description
transcript