WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1f.1 Sequence Name  H20J18.1f.1
Length (nt)  3999   Chromosome Location  X: 12503887-12525789
Chromosome . Primary Identifier  X Chromosome Location . Start  12503887
Chromosome Location . End  12525789 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1f H20J18.1f 2796   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1f.1 12503887 12525789 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255710   847   X: 12503887-12504733 Caenorhabditis elegans
Exon255725   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255737   166   X: 12505146-12505311 Caenorhabditis elegans
Exon255749   108   X: 12505607-12505714 Caenorhabditis elegans
Exon255758   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255771   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255782   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255788   86   X: 12506881-12506966 Caenorhabditis elegans
Exon255806   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255818   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255829   62   X: 12509158-12509219 Caenorhabditis elegans
Exon255839   96   X: 12513953-12514048 Caenorhabditis elegans
Exon255845   372   X: 12525418-12525789 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1f.1 12503887 12525789 -1

1 Sequence

Length
3999

1 Sequence Ontology Term

Identifier Name Description
transcript