WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1e.1 Sequence Name  H20J18.1e.1
Length (nt)  3539   Chromosome Location  X: 12503894-12509225
Chromosome . Primary Identifier  X Chromosome Location . Start  12503894
Chromosome Location . End  12509225 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1e H20J18.1e 2805   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1e.1 12503894 12509225 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255712   840   X: 12503894-12504733 Caenorhabditis elegans
Exon255724   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255731   127   X: 12505146-12505272 Caenorhabditis elegans
Exon255748   108   X: 12505607-12505714 Caenorhabditis elegans
Exon255757   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255770   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255781   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255796   134   X: 12506881-12507014 Caenorhabditis elegans
Exon255805   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255817   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255833   68   X: 12509158-12509225 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1e.1 12503894 12509225 -1

1 Sequence

Length
3539

1 Sequence Ontology Term

Identifier Name Description
transcript