WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H20J18.1a.1 Sequence Name  H20J18.1a.1
Length (nt)  3665   Chromosome Location  X: 12503897-12514048
Chromosome . Primary Identifier  X Chromosome Location . Start  12503897
Chromosome Location . End  12514048 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H20J18.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004739 scd-1 H20J18.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H20J18.1a H20J18.1a 2844   X: 12504620-12504733

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1a.1 12503897 12514048 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon255714   837   X: 12503897-12504733 Caenorhabditis elegans
Exon255718   74   X: 12505015-12505088 Caenorhabditis elegans
Exon255732   166   X: 12505146-12505311 Caenorhabditis elegans
Exon255742   108   X: 12505607-12505714 Caenorhabditis elegans
Exon255751   91   X: 12505819-12505909 Caenorhabditis elegans
Exon255764   263   X: 12506151-12506413 Caenorhabditis elegans
Exon255776   135   X: 12506643-12506777 Caenorhabditis elegans
Exon255791   134   X: 12506881-12507014 Caenorhabditis elegans
Exon255799   776   X: 12507071-12507846 Caenorhabditis elegans
Exon255811   923   X: 12507894-12508816 Caenorhabditis elegans
Exon255825   62   X: 12509158-12509219 Caenorhabditis elegans
Exon255836   96   X: 12513953-12514048 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H20J18.1a.1 12503897 12514048 -1

1 Sequence

Length
3665

1 Sequence Ontology Term

Identifier Name Description
transcript