WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22E10.2.1 Sequence Name  F22E10.2.1
Length (nt)  4319   Chromosome Location  X: 12738754-12744111
Chromosome . Primary Identifier  X Chromosome Location . Start  12738754
Chromosome Location . End  12744111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22E10.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004007 pgp-13 F22E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22E10.2 F22E10.2 3972   X: 12738996-12739052

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22E10.2.1 12738754 12744111 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256230   299   X: 12738754-12739052 Caenorhabditis elegans
Exon256231   131   X: 12739286-12739416 Caenorhabditis elegans
Exon256232   55   X: 12739465-12739519 Caenorhabditis elegans
Exon256233   98   X: 12739598-12739695 Caenorhabditis elegans
Exon256234   127   X: 12739742-12739868 Caenorhabditis elegans
Exon256235   134   X: 12739921-12740054 Caenorhabditis elegans
Exon256236   172   X: 12740101-12740272 Caenorhabditis elegans
Exon256237   1250   X: 12740353-12741602 Caenorhabditis elegans
Exon256238   242   X: 12741651-12741892 Caenorhabditis elegans
Exon256239   203   X: 12742076-12742278 Caenorhabditis elegans
Exon256240   363   X: 12742330-12742692 Caenorhabditis elegans
Exon256241   242   X: 12742753-12742994 Caenorhabditis elegans
Exon256242   697   X: 12743038-12743734 Caenorhabditis elegans
Exon256243   306   X: 12743806-12744111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22E10.2.1 12738754 12744111 1

1 Sequence

Length
4319

1 Sequence Ontology Term

Identifier Name Description
transcript