WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F11C1.6a.2 Sequence Name  F11C1.6a.2
Length (nt)  2572   Chromosome Location  X: 13008493-13013964
Chromosome . Primary Identifier  X Chromosome Location . Start  13008493
Chromosome Location . End  13013964 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F11C1.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003623 nhr-25 F11C1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F11C1.6a F11C1.6a 1719   X: 13008892-13009008

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F11C1.6a.2 13008493 13013964 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon256628   96   X: 13008493-13008588 Caenorhabditis elegans
Exon256629   123   X: 13008886-13009008 Caenorhabditis elegans
Exon256633   33   X: 13009266-13009298 Caenorhabditis elegans
Exon256636   109   X: 13009391-13009499 Caenorhabditis elegans
Exon256641   184   X: 13010339-13010522 Caenorhabditis elegans
Exon256644   125   X: 13010573-13010697 Caenorhabditis elegans
Exon256647   288   X: 13010747-13011034 Caenorhabditis elegans
Exon256650   275   X: 13011150-13011424 Caenorhabditis elegans
Exon256653   119   X: 13011751-13011869 Caenorhabditis elegans
Exon256656   246   X: 13012328-13012573 Caenorhabditis elegans
Exon256659   974   X: 13012991-13013964 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F11C1.6a.2 13008493 13013964 1

1 Sequence

Length
2572

1 Sequence Ontology Term

Identifier Name Description
transcript