WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46G10.5a.1 Sequence Name  F46G10.5a.1
Length (nt)  2736   Chromosome Location  X: 13342181-13348118
Chromosome . Primary Identifier  X Chromosome Location . Start  13342181
Chromosome Location . End  13348118 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46G10.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004238 ptr-24 F46G10.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46G10.5a F46G10.5a 2481   X: 13342181-13342402

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F46G10.5a.1 13342181 13348118 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257469   222   X: 13342181-13342402 Caenorhabditis elegans
Exon257470   210   X: 13343016-13343225 Caenorhabditis elegans
Exon257472   279   X: 13343284-13343562 Caenorhabditis elegans
Exon257474   128   X: 13343660-13343787 Caenorhabditis elegans
Exon257476   134   X: 13343838-13343971 Caenorhabditis elegans
Exon257478   86   X: 13344029-13344114 Caenorhabditis elegans
Exon257480   144   X: 13344777-13344920 Caenorhabditis elegans
Exon257482   118   X: 13344970-13345087 Caenorhabditis elegans
Exon257484   104   X: 13345136-13345239 Caenorhabditis elegans
Exon257486   274   X: 13345392-13345665 Caenorhabditis elegans
Exon257488   88   X: 13345711-13345798 Caenorhabditis elegans
Exon257490   192   X: 13345845-13346036 Caenorhabditis elegans
Exon257492   107   X: 13346342-13346448 Caenorhabditis elegans
Exon257494   122   X: 13346676-13346797 Caenorhabditis elegans
Exon257496   81   X: 13346857-13346937 Caenorhabditis elegans
Exon257498   447   X: 13347672-13348118 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F46G10.5a.1 13342181 13348118 1

1 Sequence

Length
2736

1 Sequence Ontology Term

Identifier Name Description
transcript