WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49F8.2.1 Sequence Name  C49F8.2.1
Length (nt)  2902   Chromosome Location  X: 13371542-13376992
Chromosome . Primary Identifier  X Chromosome Location . Start  13371542
Chromosome Location . End  13376992 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49F8.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008214 gem-1 C49F8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49F8.2 C49F8.2 2316   X: 13372024-13372096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49F8.2.1 13371542 13376992 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257456   555   X: 13371542-13372096 Caenorhabditis elegans
Exon257457   157   X: 13372950-13373106 Caenorhabditis elegans
Exon257458   434   X: 13373157-13373590 Caenorhabditis elegans
Exon257459   560   X: 13373678-13374237 Caenorhabditis elegans
Exon257460   432   X: 13374653-13375084 Caenorhabditis elegans
Exon257461   134   X: 13375133-13375266 Caenorhabditis elegans
Exon257462   220   X: 13376017-13376236 Caenorhabditis elegans
Exon257463   228   X: 13376289-13376516 Caenorhabditis elegans
Exon257464   105   X: 13376696-13376800 Caenorhabditis elegans
Exon257466   77   X: 13376916-13376992 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49F8.2.1 13371542 13376992 -1

1 Sequence

Length
2902

1 Sequence Ontology Term

Identifier Name Description
transcript