WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5c.1 Sequence Name  C40C9.5c.1
Length (nt)  2854   Chromosome Location  X: 13626149-13631095
Chromosome . Primary Identifier  X Chromosome Location . Start  13626149
Chromosome Location . End  13631095 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5c C40C9.5c 2385   X: 13626618-13626761

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5c.1 13626149 13631095 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257972   613   X: 13626149-13626761 Caenorhabditis elegans
Exon257976   105   X: 13626916-13627020 Caenorhabditis elegans
Exon257984   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257993   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258002   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258011   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258022   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258029   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258036   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258043   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258051   275   X: 13630241-13630515 Caenorhabditis elegans
Exon258057   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258064   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258069   47   X: 13631049-13631095 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5c.1 13626149 13631095 -1

1 Sequence

Length
2854

1 Sequence Ontology Term

Identifier Name Description
transcript