WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T10B10.7.1 Sequence Name  T10B10.7.1
Length (nt)  2537   Chromosome Location  X: 15168724-15173636
Chromosome . Primary Identifier  X Chromosome Location . Start  15168724
Chromosome Location . End  15173636 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T10B10.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003840 ocr-3 T10B10.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T10B10.7 T10B10.7 2457   X: 15168741-15168881

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T10B10.7.1 15168724 15173636 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261875   158   X: 15168724-15168881 Caenorhabditis elegans
Exon261876   274   X: 15168951-15169224 Caenorhabditis elegans
Exon261877   132   X: 15169273-15169404 Caenorhabditis elegans
Exon261878   88   X: 15169447-15169534 Caenorhabditis elegans
Exon261879   102   X: 15169895-15169996 Caenorhabditis elegans
Exon261880   409   X: 15170063-15170471 Caenorhabditis elegans
Exon261881   165   X: 15170532-15170696 Caenorhabditis elegans
Exon261882   180   X: 15170743-15170922 Caenorhabditis elegans
Exon261883   108   X: 15171571-15171678 Caenorhabditis elegans
Exon261884   167   X: 15171727-15171893 Caenorhabditis elegans
Exon261885   110   X: 15171950-15172059 Caenorhabditis elegans
Exon261886   91   X: 15172101-15172191 Caenorhabditis elegans
Exon261887   127   X: 15172241-15172367 Caenorhabditis elegans
Exon261888   117   X: 15172411-15172527 Caenorhabditis elegans
Exon261889   132   X: 15172584-15172715 Caenorhabditis elegans
Exon261890   177   X: 15173460-15173636 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T10B10.7.1 15168724 15173636 1

1 Sequence

Length
2537

1 Sequence Ontology Term

Identifier Name Description
transcript