WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F52B5.5b Sequence Name  F52B5.5b
Length (nt)  594   Chromosome Location  I: 8327647-8327676
Chromosome . Primary Identifier  I Chromosome Location . Start  8327647
Chromosome Location . End  8327676
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52B5.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE38369 CEP-1, isoform b 22.6 197 Caenorhabditis elegans
 

Other

38 RNAi

WormBase ID
WBRNAi00098324
WBRNAi00098323
WBRNAi00098325
WBRNAi00113226
WBRNAi00097918
WBRNAi00047924
WBRNAi00062891
WBRNAi00098355
WBRNAi00003738
WBRNAi00065429
WBRNAi00065474
WBRNAi00098262
WBRNAi00098263
WBRNAi00097756
WBRNAi00097757
WBRNAi00065833
WBRNAi00097755
WBRNAi00112996
WBRNAi00065473
WBRNAi00097924
WBRNAi00107527
WBRNAi00098071
WBRNAi00098070
WBRNAi00077204
WBRNAi00089612
WBRNAi00089644
WBRNAi00098065
WBRNAi00098229
WBRNAi00097911
WBRNAi00097923

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F52B5.5b 8327647 8327676 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000467 cep-1 F52B5.5 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:F52B5.5b 8327647 8327676 1
CDS:F52B5.5b 8328031 8328267 1
CDS:F52B5.5b 8328333 8328454 1
CDS:F52B5.5b 8328503 8328707 1

1 Sequence

Length
594

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F52B5.5b.2 F52B5.5b.2 2103   I: 8324286-8328854
Transcript:F52B5.5b.3 F52B5.5b.3 2537   I: 8324288-8328852
Transcript:F52B5.5b.4 F52B5.5b.4 2819   I: 8324288-8328852
Transcript:F52B5.5b.1 F52B5.5b.1 925   I: 8327463-8328854