WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39B1.1.1 Sequence Name  F39B1.1.1
Length (nt)  5290   Chromosome Location  X: 15234690-15246399
Chromosome . Primary Identifier  X Chromosome Location . Start  15234690
Chromosome Location . End  15246399 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39B1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009552 piki-1 F39B1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39B1.1 F39B1.1 4824   X: 15235122-15235319

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F39B1.1.1 15234690 15246399 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261986   630   X: 15234690-15235319 Caenorhabditis elegans
Exon261987   146   X: 15235396-15235541 Caenorhabditis elegans
Exon261988   151   X: 15235596-15235746 Caenorhabditis elegans
Exon261996   136   X: 15237608-15237743 Caenorhabditis elegans
Exon261997   101   X: 15237794-15237894 Caenorhabditis elegans
Exon261998   76   X: 15237945-15238020 Caenorhabditis elegans
Exon261999   245   X: 15238228-15238472 Caenorhabditis elegans
Exon262000   157   X: 15238524-15238680 Caenorhabditis elegans
Exon262001   437   X: 15238731-15239167 Caenorhabditis elegans
Exon262002   586   X: 15239413-15239998 Caenorhabditis elegans
Exon262003   447   X: 15240084-15240530 Caenorhabditis elegans
Exon262004   161   X: 15240577-15240737 Caenorhabditis elegans
Exon262005   449   X: 15240788-15241236 Caenorhabditis elegans
Exon262008   119   X: 15241662-15241780 Caenorhabditis elegans
Exon262009   164   X: 15241833-15241996 Caenorhabditis elegans
Exon262010   130   X: 15242262-15242391 Caenorhabditis elegans
Exon262014   229   X: 15243611-15243839 Caenorhabditis elegans
Exon262015   109   X: 15243884-15243992 Caenorhabditis elegans
Exon262016   215   X: 15244873-15245087 Caenorhabditis elegans
Exon262017   168   X: 15245294-15245461 Caenorhabditis elegans
Exon262018   206   X: 15245592-15245797 Caenorhabditis elegans
Exon262019   150   X: 15246072-15246221 Caenorhabditis elegans
Exon262020   78   X: 15246322-15246399 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F39B1.1.1 15234690 15246399 -1

1 Sequence

Length
5290

1 Sequence Ontology Term

Identifier Name Description
transcript