WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:DY3.4a Sequence Name  DY3.4a
Length (nt)  1686   Chromosome Location  I: 8768521-8768652
Chromosome . Primary Identifier  I Chromosome Location . Start  8768521
Chromosome Location . End  8768652
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
DY3.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE15748 TRT-1, isoform a 65.8 561 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00000765
WBRNAi00043551
WBRNAi00003301
WBRNAi00030443

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:DY3.4a 8768521 8768652 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006618 trt-1 DY3.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:DY3.4a 8768521 8768652 1
CDS:DY3.4a 8768738 8768922 1
CDS:DY3.4a 8768971 8769143 1
CDS:DY3.4a 8769200 8769456 1
CDS:DY3.4a 8769699 8769867 1
CDS:DY3.4a 8769909 8770062 1
CDS:DY3.4a 8770108 8770264 1
CDS:DY3.4a 8770599 8770856 1
CDS:DY3.4a 8770934 8770999 1
CDS:DY3.4a 8771047 8771181 1

1 Sequence

Length
1686

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:DY3.4a.2 DY3.4a.2 1851   I: 8765745-8771251
Transcript:DY3.4a.3 DY3.4a.3 1865   I: 8768325-8771251
Transcript:DY3.4a.1 DY3.4a.1 1753   I: 8768521-8771248