WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01G12.5b.1 Sequence Name  F01G12.5b.1
Length (nt)  5280   Chromosome Location  X: 16381022-16389327
Chromosome . Primary Identifier  X Chromosome Location . Start  16381022
Chromosome Location . End  16389327 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01G12.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002280 let-2 F01G12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01G12.5b F01G12.5b 5280   X: 16381022-16381114

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F01G12.5b.1 16381022 16389327 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264060   93   X: 16381022-16381114 Caenorhabditis elegans
Exon264062   464   X: 16381173-16381636 Caenorhabditis elegans
Exon264064   792   X: 16381719-16382510 Caenorhabditis elegans
Exon264066   232   X: 16382564-16382795 Caenorhabditis elegans
Exon264068   815   X: 16382841-16383655 Caenorhabditis elegans
Exon264070   673   X: 16383933-16384605 Caenorhabditis elegans
Exon264072   862   X: 16384658-16385519 Caenorhabditis elegans
Exon264074   272   X: 16385567-16385838 Caenorhabditis elegans
Exon264076   165   X: 16385888-16386052 Caenorhabditis elegans
Exon264078   117   X: 16386099-16386215 Caenorhabditis elegans
Exon264079   111   X: 16386613-16386723 Caenorhabditis elegans
Exon264082   78   X: 16386982-16387059 Caenorhabditis elegans
Exon264084   176   X: 16387111-16387286 Caenorhabditis elegans
Exon264086   189   X: 16387788-16387976 Caenorhabditis elegans
Exon264090   100   X: 16388299-16388398 Caenorhabditis elegans
Exon264093   63   X: 16388773-16388835 Caenorhabditis elegans
Exon264096   55   X: 16389033-16389087 Caenorhabditis elegans
Exon264097   23   X: 16389305-16389327 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F01G12.5b.1 16381022 16389327 -1

1 Sequence

Length
5280

1 Sequence Ontology Term

Identifier Name Description
transcript