WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27B1.1.1 Sequence Name  T27B1.1.1
Length (nt)  6024   Chromosome Location  X: 16540674-16551211
Chromosome . Primary Identifier  X Chromosome Location . Start  16540674
Chromosome Location . End  16551211 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27B1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003883 osm-1 T27B1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27B1.1 T27B1.1 5214   X: 16541419-16541457

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T27B1.1.1 16540674 16551211 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264410   784   X: 16540674-16541457 Caenorhabditis elegans
Exon264411   144   X: 16541813-16541956 Caenorhabditis elegans
Exon264412   113   X: 16542010-16542122 Caenorhabditis elegans
Exon264413   106   X: 16542178-16542283 Caenorhabditis elegans
Exon264414   80   X: 16542889-16542968 Caenorhabditis elegans
Exon264415   76   X: 16543015-16543090 Caenorhabditis elegans
Exon264416   212   X: 16543134-16543345 Caenorhabditis elegans
Exon264417   124   X: 16543572-16543695 Caenorhabditis elegans
Exon264418   499   X: 16543743-16544241 Caenorhabditis elegans
Exon264419   335   X: 16544604-16544938 Caenorhabditis elegans
Exon264420   237   X: 16544983-16545219 Caenorhabditis elegans
Exon264421   291   X: 16545268-16545558 Caenorhabditis elegans
Exon264422   255   X: 16546122-16546376 Caenorhabditis elegans
Exon264423   106   X: 16546424-16546529 Caenorhabditis elegans
Exon264424   68   X: 16546611-16546678 Caenorhabditis elegans
Exon264425   87   X: 16546730-16546816 Caenorhabditis elegans
Exon264426   300   X: 16546870-16547169 Caenorhabditis elegans
Exon264427   180   X: 16547331-16547510 Caenorhabditis elegans
Exon264428   235   X: 16547558-16547792 Caenorhabditis elegans
Exon264429   199   X: 16548109-16548307 Caenorhabditis elegans
Exon264430   298   X: 16548356-16548653 Caenorhabditis elegans
Exon264431   315   X: 16548702-16549016 Caenorhabditis elegans
Exon264432   600   X: 16549071-16549670 Caenorhabditis elegans
Exon264433   215   X: 16550752-16550966 Caenorhabditis elegans
Exon264434   165   X: 16551047-16551211 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T27B1.1.1 16540674 16551211 1

1 Sequence

Length
6024

1 Sequence Ontology Term

Identifier Name Description
transcript