WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08H4.1a.3 Sequence Name  T08H4.1a.3
Length (nt)  3792   Chromosome Location  II: 4107263-4127853
Chromosome . Primary Identifier  II Chromosome Location . Start  4107263
Chromosome Location . End  4127853 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08H4.1a T08H4.1a 2589   II: 4120337-4120387

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.3 4107263 4127853 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46798   368   II: 4107263-4107630 Caenorhabditis elegans
Exon46803   166   II: 4109210-4109375 Caenorhabditis elegans
Exon46811   142   II: 4111906-4112047 Caenorhabditis elegans
Exon46819   123   II: 4112482-4112604 Caenorhabditis elegans
Exon46829   131   II: 4120257-4120387 Caenorhabditis elegans
Exon46837   80   II: 4121113-4121192 Caenorhabditis elegans
Exon46846   378   II: 4121965-4122342 Caenorhabditis elegans
Exon46855   268   II: 4122395-4122662 Caenorhabditis elegans
Exon46864   96   II: 4122733-4122828 Caenorhabditis elegans
Exon46873   784   II: 4123244-4124027 Caenorhabditis elegans
Exon46882   647   II: 4124421-4125067 Caenorhabditis elegans
Exon46891   108   II: 4125112-4125219 Caenorhabditis elegans
Exon46900   167   II: 4125277-4125443 Caenorhabditis elegans
Exon46913   334   II: 4127520-4127853 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.3 4107263 4127853 1

1 Sequence

Length
3792

1 Sequence Ontology Term

Identifier Name Description
transcript