WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T08H4.1a Sequence Name  T08H4.1a
Length (nt)  2589   Chromosome Location  II: 4120337-4120387
Chromosome . Primary Identifier  II Chromosome Location . Start  4120337
Chromosome Location . End  4120387
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE04926 RHGF-2, isoform a 97.5 862 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00052907
WBRNAi00018478
WBRNAi00026242
WBRNAi00026243
WBRNAi00027466
WBRNAi00103518

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T08H4.1a 4120337 4120387 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:T08H4.1a 4120337 4120387 1
CDS:T08H4.1a 4121113 4121192 1
CDS:T08H4.1a 4121965 4122342 1
CDS:T08H4.1a 4122395 4122662 1
CDS:T08H4.1a 4122733 4122828 1
CDS:T08H4.1a 4123244 4124027 1
CDS:T08H4.1a 4124421 4125067 1
CDS:T08H4.1a 4125112 4125219 1
CDS:T08H4.1a 4125277 4125443 1
CDS:T08H4.1a 4127520 4127529 1

1 Sequence

Length
2589

1 Sequence Ontology Term

Identifier Name Description
CDS  

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08H4.1a.1 T08H4.1a.1 3501   II: 4100788-4127849
Transcript:T08H4.1a.3 T08H4.1a.3 3792   II: 4107263-4127853
Transcript:T08H4.1a.2 T08H4.1a.2 3420   II: 4109210-4127849
Transcript:T08H4.1a.4 T08H4.1a.4 3375   II: 4111724-4127853
Transcript:T08H4.1a.5 T08H4.1a.5 2995   II: 4120255-4127853