WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08H4.1a.4 Sequence Name  T08H4.1a.4
Length (nt)  3375   Chromosome Location  II: 4111724-4127853
Chromosome . Primary Identifier  II Chromosome Location . Start  4111724
Chromosome Location . End  4127853 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1a.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08H4.1a T08H4.1a 2589   II: 4120337-4120387

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.4 4111724 4127853 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46808   117   II: 4111724-4111840 Caenorhabditis elegans
Exon46812   142   II: 4111906-4112047 Caenorhabditis elegans
Exon46820   123   II: 4112482-4112604 Caenorhabditis elegans
Exon46830   131   II: 4120257-4120387 Caenorhabditis elegans
Exon46838   80   II: 4121113-4121192 Caenorhabditis elegans
Exon46847   378   II: 4121965-4122342 Caenorhabditis elegans
Exon46856   268   II: 4122395-4122662 Caenorhabditis elegans
Exon46865   96   II: 4122733-4122828 Caenorhabditis elegans
Exon46874   784   II: 4123244-4124027 Caenorhabditis elegans
Exon46883   647   II: 4124421-4125067 Caenorhabditis elegans
Exon46892   108   II: 4125112-4125219 Caenorhabditis elegans
Exon46901   167   II: 4125277-4125443 Caenorhabditis elegans
Exon46914   334   II: 4127520-4127853 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1a.4 4111724 4127853 1

1 Sequence

Length
3375

1 Sequence Ontology Term

Identifier Name Description
transcript