WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195007 Gene Name  mir-5595
Sequence Name  ? F26H11.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by alg-5 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  :± Length (nt)  ? 65
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195007

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F26H11.7b F26H11.7b 23   II: 14399565-14399587
Transcript:F26H11.7a F26H11.7a 24   II: 14399606-14399629
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00082609
WBRNAi00082406
WBRNAi00107392

7 Allele

Public Name
gk963801
gk963053
gk962684
gk487481
WBVar02040996
gk847682
WBVar00556821

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195007 14399565 14399629 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_downregulated_miRNA
  MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
  MicroRNAs that showed significantly increased expression in alg-5(ram2), comparing to in N2. DESeq2, Fold change > 1.5. WBPaper00051404:alg-5(ram2)_upregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195007 14399565 14399629 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
65

1 Sequence Ontology Term