WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H42K12.1a.1 Sequence Name  H42K12.1a.1
Length (nt)  2402   Chromosome Location  X: 1321353-1327986
Chromosome . Primary Identifier  X Chromosome Location . Start  1321353
Chromosome Location . End  1327986 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H42K12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003965 pdk-1 H42K12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H42K12.1a H42K12.1a 1899   X: 1321363-1321449

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H42K12.1a.1 1321353 1327986 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223901   97   X: 1321353-1321449 Caenorhabditis elegans
Exon223902   159   X: 1322173-1322331 Caenorhabditis elegans
Exon223904   196   X: 1324383-1324578 Caenorhabditis elegans
Exon223906   333   X: 1324696-1325028 Caenorhabditis elegans
Exon223909   88   X: 1325075-1325162 Caenorhabditis elegans
Exon223910   166   X: 1325212-1325377 Caenorhabditis elegans
Exon223912   242   X: 1325429-1325670 Caenorhabditis elegans
Exon223915   51   X: 1326079-1326129 Caenorhabditis elegans
Exon223916   289   X: 1326180-1326468 Caenorhabditis elegans
Exon223918   168   X: 1326540-1326707 Caenorhabditis elegans
Exon223921   613   X: 1327374-1327986 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H42K12.1a.1 1321353 1327986 1

1 Sequence

Length
2402

1 Sequence Ontology Term

Identifier Name Description
transcript