WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5l.1 Sequence Name  T02C5.5l.1
Length (nt)  6009   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5l T02C5.5l 6009   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226431   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226445   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226459   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226473   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226487   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226497   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226506   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226520   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226534   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226552   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226567   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226582   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226597   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226612   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226627   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226642   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226657   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226672   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226687   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226702   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226717   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226736   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226747   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226762   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226777   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226792   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226807   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226820   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226839   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

1 Sequence

Length
6009

1 Sequence Ontology Term

Identifier Name Description
transcript