WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10B3.10a.1 Sequence Name  K10B3.10a.1
Length (nt)  7807   Chromosome Location  X: 3117439-3127079
Chromosome . Primary Identifier  X Chromosome Location . Start  3117439
Chromosome Location . End  3127079 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004951 spc-1 K10B3.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10B3.10a K10B3.10a 7284   X: 3117944-3118072

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10a.1 3117439 3127079 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227706   634   X: 3117439-3118072 Caenorhabditis elegans
Exon227708   148   X: 3118129-3118276 Caenorhabditis elegans
Exon227710   303   X: 3118323-3118625 Caenorhabditis elegans
Exon227712   143   X: 3118678-3118820 Caenorhabditis elegans
Exon227714   577   X: 3118869-3119445 Caenorhabditis elegans
Exon227716   2466   X: 3119499-3121964 Caenorhabditis elegans
Exon227718   206   X: 3122014-3122219 Caenorhabditis elegans
Exon227721   156   X: 3122581-3122736 Caenorhabditis elegans
Exon227723   1161   X: 3122781-3123941 Caenorhabditis elegans
Exon227725   1581   X: 3123985-3125565 Caenorhabditis elegans
Exon227727   126   X: 3125618-3125743 Caenorhabditis elegans
Exon227729   85   X: 3126721-3126805 Caenorhabditis elegans
Exon227732   221   X: 3126859-3127079 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10a.1 3117439 3127079 -1

1 Sequence

Length
7807

1 Sequence Ontology Term

Identifier Name Description
transcript