WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K10B3.10a Sequence Name  K10B3.10a
Length (nt)  7284   Chromosome Location  X: 3117944-3118072
Chromosome . Primary Identifier  X Chromosome Location . Start  3117944
Chromosome Location . End  3118072
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.10a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE07373 SPC-1, isoform a 281.7 2427 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00008979
WBRNAi00025934
WBRNAi00000485
WBRNAi00050477
WBRNAi00080495
WBRNAi00060092
WBRNAi00060093
WBRNAi00022774
WBRNAi00060091
WBRNAi00060090

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K10B3.10a 3117944 3118072 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004951 spc-1 K10B3.10 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier
Start End Strand
CDS:K10B3.10a 3117944 3118072 -1
CDS:K10B3.10a 3118129 3118276 -1
CDS:K10B3.10a 3118323 3118625 -1
CDS:K10B3.10a 3118678 3118820 -1
CDS:K10B3.10a 3118869 3119445 -1
CDS:K10B3.10a 3119499 3121964 -1
CDS:K10B3.10a 3122014 3122219 -1
CDS:K10B3.10a 3122581 3122736 -1
CDS:K10B3.10a 3122781 3123941 -1
CDS:K10B3.10a 3123985 3125565 -1
CDS:K10B3.10a 3125618 3125743 -1
CDS:K10B3.10a 3126721 3126805 -1
CDS:K10B3.10a 3126859 3127061 -1

1 Sequence

Length
7284

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K10B3.10a.1 K10B3.10a.1 7807   X: 3117439-3127079