WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D8.5.1 Sequence Name  C42D8.5.1
Length (nt)  3082   Chromosome Location  X: 5092481-5097067
Chromosome . Primary Identifier  X Chromosome Location . Start  5092481
Chromosome Location . End  5097067 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D8.5 C42D8.5 2721   X: 5092842-5093012

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.5.1 5092481 5097067 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon232532   532   X: 5092481-5093012 Caenorhabditis elegans
Exon232533   232   X: 5093063-5093294 Caenorhabditis elegans
Exon232534   230   X: 5093664-5093893 Caenorhabditis elegans
Exon232535   289   X: 5093946-5094234 Caenorhabditis elegans
Exon232536   147   X: 5094283-5094429 Caenorhabditis elegans
Exon232537   251   X: 5094483-5094733 Caenorhabditis elegans
Exon232538   502   X: 5094790-5095291 Caenorhabditis elegans
Exon232539   317   X: 5095351-5095667 Caenorhabditis elegans
Exon232541   72   X: 5096373-5096444 Caenorhabditis elegans
Exon232542   90   X: 5096510-5096599 Caenorhabditis elegans
Exon232543   420   X: 5096648-5097067 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D8.5.1 5092481 5097067 -1

1 Sequence

Length
3082

1 Sequence Ontology Term

Identifier Name Description
transcript