WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07E4.1b.2 Sequence Name  R07E4.1b.2
Length (nt)  3371   Chromosome Location  X: 5963386-5970186
Chromosome . Primary Identifier  X Chromosome Location . Start  5963386
Chromosome Location . End  5970186 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07E4.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019935 R07E4.1 R07E4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07E4.1b R07E4.1b 3108   X: 5963401-5963537

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1b.2 5963386 5970186 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235336   152   X: 5963386-5963537 Caenorhabditis elegans
Exon235341   38   X: 5963933-5963970 Caenorhabditis elegans
Exon235344   111   X: 5964766-5964876 Caenorhabditis elegans
Exon235347   204   X: 5965608-5965811 Caenorhabditis elegans
Exon235350   95   X: 5965869-5965963 Caenorhabditis elegans
Exon235353   190   X: 5966385-5966574 Caenorhabditis elegans
Exon235356   189   X: 5966641-5966829 Caenorhabditis elegans
Exon235359   108   X: 5966875-5966982 Caenorhabditis elegans
Exon235362   91   X: 5967038-5967128 Caenorhabditis elegans
Exon235365   210   X: 5967172-5967381 Caenorhabditis elegans
Exon235368   285   X: 5967583-5967867 Caenorhabditis elegans
Exon235371   145   X: 5967910-5968054 Caenorhabditis elegans
Exon235374   180   X: 5968123-5968302 Caenorhabditis elegans
Exon235377   115   X: 5968348-5968462 Caenorhabditis elegans
Exon235380   164   X: 5968509-5968672 Caenorhabditis elegans
Exon235383   77   X: 5968724-5968800 Caenorhabditis elegans
Exon235386   297   X: 5968854-5969150 Caenorhabditis elegans
Exon235389   232   X: 5969427-5969658 Caenorhabditis elegans
Exon235390   488   X: 5969699-5970186 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R07E4.1b.2 5963386 5970186 1

1 Sequence

Length
3371

1 Sequence Ontology Term

Identifier Name Description
transcript