WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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CDS :

WormMine ID  CDS:F38B6.5a Sequence Name  F38B6.5a
Length (nt)  1026   Chromosome Location  X: 6672983-6673048
Chromosome . Primary Identifier  X Chromosome Location . Start  6672983
Chromosome Location . End  6673048
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38B6.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE04518 COL-172, isoform a 34.9 341 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00046689
WBRNAi00014544
WBRNAi00031950

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F38B6.5a 6672983 6673048 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000745 col-172 F38B6.5 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:F38B6.5a 6672983 6673048 1
CDS:F38B6.5a 6673105 6673215 1
CDS:F38B6.5a 6673261 6673396 1
CDS:F38B6.5a 6673443 6673562 1
CDS:F38B6.5a 6673608 6673957 1
CDS:F38B6.5a 6674057 6674299 1

1 Sequence

Length
1026

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F38B6.5a.1 F38B6.5a.1 1314   X: 6672819-6674423