WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09E2.4b.3 Sequence Name  K09E2.4b.3
Length (nt)  2522   Chromosome Location  X: 8664281-8671750
Chromosome . Primary Identifier  X Chromosome Location . Start  8664281
Chromosome Location . End  8671750 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09E2.4b.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004369 rig-1 K09E2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09E2.4b K09E2.4b 903   X: 8669299-8669464

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.4b.3 8664281 8671750 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon242622   177   X: 8664281-8664457 Caenorhabditis elegans
Exon242629   205   X: 8664506-8664710 Caenorhabditis elegans
Exon242632   337   X: 8664762-8665098 Caenorhabditis elegans
Exon242636   223   X: 8665144-8665366 Caenorhabditis elegans
Exon242640   138   X: 8665412-8665549 Caenorhabditis elegans
Exon242645   136   X: 8666073-8666208 Caenorhabditis elegans
Exon242653   174   X: 8669291-8669464 Caenorhabditis elegans
Exon242661   128   X: 8670084-8670211 Caenorhabditis elegans
Exon242669   288   X: 8670324-8670611 Caenorhabditis elegans
Exon242677   152   X: 8670914-8671065 Caenorhabditis elegans
Exon242683   564   X: 8671187-8671750 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09E2.4b.3 8664281 8671750 1

1 Sequence

Length
2522

1 Sequence Ontology Term

Identifier Name Description
transcript