WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K09E2.4b Sequence Name  K09E2.4b
Length (nt)  903   Chromosome Location  X: 8669299-8669464
Chromosome . Primary Identifier  X Chromosome Location . Start  8669299
Chromosome Location . End  8669464
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09E2.4b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE34053 RIG-1, isoform b 32.8 300 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00034205
WBRNAi00002396

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K09E2.4b 8669299 8669464 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004369 rig-1 K09E2.4 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:K09E2.4b 8669299 8669464 1
CDS:K09E2.4b 8670084 8670211 1
CDS:K09E2.4b 8670324 8670611 1
CDS:K09E2.4b 8670914 8671065 1
CDS:K09E2.4b 8671187 8671355 1

1 Sequence

Length
903

1 Sequence Ontology Term

Identifier Name Description
CDS  

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K09E2.4b.2 K09E2.4b.2 3651   X: 8661288-8671703
Transcript:K09E2.4b.3 K09E2.4b.3 2522   X: 8664281-8671750
Transcript:K09E2.4b.4 K09E2.4b.4 1447   X: 8666067-8671749
Transcript:K09E2.4b.5 K09E2.4b.5 1491   X: 8667590-8671827
Transcript:K09E2.4b.6 K09E2.4b.6 2937   X: 8667693-8671783
Transcript:K09E2.4b.1 K09E2.4b.1 1307   X: 8669291-8671751